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Tophat fusion post

Tophat fusion post

Name: Tophat fusion post

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TopHat-Fusion is an enhanced version of TopHat with the ability to align After running tophat, you can run tophat-fusion-post to filter out fusion candidates. TopHat-Fusion is an enhanced version of TopHat with the ability to align reads TopHat-Fusion consists of two sub-programs (tophat and tophat-fusion-post). Does anyone use tophat-fusion-post? After I run it, the output is empty. I put the tophat-fusion outputs, blast database and annotation files in the. So, tophat-fusion-post is a python wrapper. If you dig in to it you'll find cmd = [' bowtie', '-p', '8', '-a', '-n', '3', '-m', '', bwt_idx_prefix, '-f'. Spliced read mapper for RNA-Seq. Contribute to infphilo/tophat development by creating an account on GitHub.

TopHat-Fusion is an algorithm designed to discover transcripts representing fusion After the assembly step, it then uses BLAT [18] to map the. Published Workflows | jeremy | Tophat fusion post output to chrint. Galaxy Workflow ' Tophat fusion post output to chrint'. Step, Annotation. Step 1: Compute. The sum of supporting reads and pairs is at least this number for a fusion to be reported. Fusion Read Mismatches: Reads support fusions if they map across. TopHat-Fusion is an algorithm designed to discover transcripts representing fusion cd output_fusion tophat-fusion-post -i sample_name -o. The reference genomes have been indexed and fusion caller specific setup tophatfusion: 17 minutes . We then run the tophat-fusion post-processing step.

TopHat-Fusion is an enhanced version of TopHat with the ability to align After running tophat, you can run tophat-fusion-post to filter out fusion candidates. TopHat-Fusion is an enhanced version of TopHat with the ability to align reads TopHat-Fusion consists of two sub-programs (tophat and tophat-fusion-post). Does anyone use tophat-fusion-post? After I run it, the output is empty. I put the tophat-fusion outputs, blast database and annotation files in the. So, tophat-fusion-post is a python wrapper. If you dig in to it you'll find cmd = [' bowtie', '-p', '8', '-a', '-n', '3', '-m', '', bwt_idx_prefix, '-f'. Spliced read mapper for RNA-Seq. Contribute to infphilo/tophat development by creating an account on GitHub.

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